When song is saved, a "new" instance of that song file gets created somewhere, but is invisible to the Step OS

I’m guessing this is a bi-product of you renaming your songs on your PC separately. If so then I suggest we close this bug and focus more on what was causing your issues in your original bug.

However if it’s still relevant please continue. I for one am not able to reproduce this and have the impression it’s relevant to the issues caused by your initial report.